I have been trying to do bio image analysis visualizations with holoviz but so far no luck importing bio formats to get the kind of visualizations you get with parq dataset. I have a minimal example where I am reading in a tif file with rasterio having shape (T,Y,X). After that I create a two dimensional image by taking the fist time point and have a csv file of T,Y,X locations from which I choose the Y,X locations at T = 1, I try to open this in dashboard by following the scipy tutorials that worked with parq dataset but I get errors that I do not understand what they mean.
Here is my notebook that details my steps and I am looking for a working example with tif files that can import some locations from a csv file to show it along with the input image.
Example notebook of tif file as input